CoRegTor documentation

• Using the CoRegTor package
  • Installing the tool
  • Preparing the data
  • Selecting Transcription factor sources
  • Running CoRegTor the easy way
  • Manual validation of a biological case study
  • Exploring the complete CoRegTor pipeline
• Running CoRegTor on multiple targets
  • CLI Commands summary
  • Setup
  • Method 1: Direct run (small runs)
  • Method 2: Bulk run (large runs and HPC)
• API Reference
  • RunCoRegTor()
  • PlotClusters()
  • PlotExprData()
  • create_model_input()
  • create_model()
  • tree_paths()
  • create_context()
  • transform_context()
  • compare_context()
  • identify_coregulators()